• Transfer Files Using Amazon S3

    Setup You will need to install and configure the awscli package in order to access objects in S3. Install the AWS CLI The AWS CLI is available through the pip/pip3 installer: If you have administrator privileges type pip install awscli $('#copybtn893256741’).click(function(){ var $temp = $(""); $(“body”).append($temp); $temp.val($('#893256741’).text()).select(); document.execCommand(“copy”); $temp.remove(); var $this = $(this); $(this).fadeOut(200); $(this).delay(2000); $(this).fadeIn(200); }); Otherwise use pip install –user awscli $('#copybtn852731946’).click(function(){ var $temp = $(""); $(“body”).append($temp); $temp.val($('#852731946’).text()).select(); document.execCommand(“copy”); $temp.remove(); var $this = $(this); $(this).fadeOut(200); $(this).delay(2000); $(this).fadeIn(200); }); The project is open source, so you can also download the source at https://github.
  • Globus Command-Line Interface

    Install the Globus CLI The Globus CLI is available through the pip installer: If you have administrator privileges type pip install globus-cli Otherwise use pip install –user globus-cli The project is open source, so you can also download the source at https://github.com/globus/globus-cli If you would like to use the CLI from Rivanna, please follow these directions below. Authenticate using the Globus CLI Log in against your institutional authentication provider. In the case of UVA, we use NetBadge for signing in: globus login This will open a page in your web browser where you select your institution and proceed to login:
  • Bioinformatics Resources on Rivanna

    The UVA research community has access to numerous bioinformatics software installed directly or available through the bioconda Python modules. Click here for a comprehensive list of currently-installed bioinformatics software. Popular Bioinformatics Software Below are some popular tools and useful links for their documentation and usage: .tg {border-collapse:collapse;border-spacing:0;border-color:#ccc;} .tg td{font-family:Arial, sans-serif;font-size:14px;padding:10px 5px;border-style:solid;border-width:0px;overflow:hidden;word-break:normal;border-color:#ccc;color:#333;background-color:#fff;} .tg th{font-family:Arial, sans-serif;font-size:14px;font-weight:normal;padding:10px 5px;border-style:solid;border-width:0px;overflow:hidden;word-break:normal;border-color:#ccc;color:#333;background-color:#f0f0f0;} .tg .tg-hy9w{background-color:#eceeef;border-color:inherit;vertical-align:middle;} .tg .tg-dc35{background-color:#f9f9f9;border-color:inherit;vertical-align:middle;} .tg .tg-hy9w-nw{background-color:#eceeef;border-color:inherit;vertical-align:middle;white-space:nowrap;} .tg .tg-dc35-nw{background-color:#f9f9f9;border-color:inherit;vertical-align:middle;white-space:nowrap;} .tg .tg-0qmj{font-weight:bold;background-color:#eceeef;border-color:inherit;vertical-align:middle;} .scroll thead, .scroll tbody {display: block} .scroll tbody {overflow-y: auto; height: 500px;} .scroll thead tr:after {content: ‘';overflow-y: scroll; visibility: hidden; height: 0;} Tool Version Description Useful Links BEDTools 2.
  • Drive Mapping on Windows or Mac OSX

    Value and Project storage can be mapped to your Windows or Mac computer as a remote drive. If you are off Grounds you must be running a VPN, such as the UVA Anywhere or the More Secure VPN from ITS. We recommend the More Secure VPN if that is available to you. Windows Open a File Explorer page. In Windows 10 first select This PC. This is not necessary for earlier versions of Windows. When you see the Computer tab, select that, then select Map Network Drive. When the dialog box appears, the default drive letter will be Z. You can change this to any other available letter if you wish.
  • How To

    General General tips and tricks for computational research. General HowTos › Rivanna High Performance Computing platform Rivanna HowTos › Ivy Secure Data Computing Platform Ivy HowTos › Storage Research Data Storage & Transfer Storage HowTos ›
  • Image Processing & Scientific Visualization on Rivanna

    Available Software To get an up-to-date list of the installed image processing and visualization tools, log on to Rivanna and run the following command in a terminal window: module keyword vis To get more information about a specific module version, run the module spider command, for example: module spider blender/2.78c List of Image Processing and Visualization Software Modules function searchFunction() { var input, filter, table, tr, td, i, txtValue; input = document.getElementById(“searchInput”); filter = input.value.toUpperCase(); table = document.getElementById(“moduleTable”); tr = table.getElementsByTagName(“tr”); for (i = 0; i -1) { tr[i].style.display = “"; } else { tr[i].style.display = “none”; } } } } Module Category Description atk vis ATK provides the set of accessibility interfaces that are implemented by other toolkits and applications.