Description
A set of analysis piplines that perform sample demultiplexing, barcode processing, and single cell 3' gene counting.
Software Category: URL: https://www.10xgenomics.com/
For detailed information, visit the Cell Ranger
website.
Available Versions
To find the available versions and learn how to load them, run:
module spider cellranger
The output of the command shows the available Cell Ranger
module versions.
For detailed information about a particular Cell Ranger
module, including how to load the module, run the module spider command with the module’s full version label. For example:
module spider cellranger/4.0.0
| Module | Version | Module Load Command |
|---|
| cellranger | 4.0.0 | module load cellranger/4.0.0 |
| cellranger | 5.0.0 | module load cellranger/5.0.0 |
| cellranger | 6.0.1 | module load cellranger/6.0.1 |
| cellranger | 7.0.1 | module load cellranger/7.0.1 |
Important note on mkfastq
If you are using the mkfastq subcommand, please do not load the bcl2fastq2 module. Cell Ranger requires a statically linked binary of bcl2fastq, whereas the bcl2fastq2 module provides a dynamically linked binary. We have prepared a separate statically linked bcl2fastq, which will be made available to you automatically upon loading the cellranger module.
|
HPC, software, bio
